unravel.viz

Created on Sat Apr 8 20:41:36 2023

@author: DELINTE Nicolas

Functions

compute_alpha_surface(vf[, method, ...])	Computes the mesh for the alpha coefficient surface based on the vectors of vf.
convert_to_gif(array, output_folder[, ...])	Creates a GIF from a 3D volume.
create_gif_pyvista_plotter(plotter, file_path)	Create a 360° rotation GIF of the current 3D view. Example usage:
create_streamline_propagation_gif(trk, ...)	Create a GIF of neural activity propagating through all streamlines.
export_alpha_surface(vf, output_path[, ...])	Computes and exports the mesh for the alpha coefficient surface based on the vectors of vList.
grayscale_to_rgb(array)	Reapeats a 3D array three times to create a 3D rgb image.
overlap_volumes(vol_list[, rgb, order])	Overlaps multiple volumes, zero is taken as transparent.
plot_alpha_surface_matplotlib(vf[, method, ...])	Computes and plots the mesh for the alpha coefficient surface based on the vectors of vf.
plot_alpha_surface_pyvista(vf[, method, ...])	Computes and plots the mesh for the alpha coefficient surface based on the vectors of vf.
plot_metric_along_trajectory(mean, dev[, ...])	Plots the output of unravel.analysis.get_metric_along_trajectory.
plot_nodes_and_surfaces(point_array[, ...])	Visualize output of stream.extract_nodes
plot_roi_sections(roi[, voxel, background, ...])
plot_trk(trk_file[, scalar, color_map, ...])	3D render for .trk files.